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Advances in understanding and improving genetic diversity in dairy cattle
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08 November 2026

Genetic diversity in dairy cattle underpins long-term productivity, resilience, and adaptability. Although structured breeding and genomic selection have substantially accelerated genetic gain in traits such as milk yield and feed efficiency, these advances have simultaneously reduced effective population size, increased inbreeding, and eroded genetic variability. This chapter synthesizes pedigree- and genomic-based approaches for quantifying and managing genetic diversity, including effective population size, genomic relationships, and runs of homozygosity. The consequences of diversity loss are examined, with emphasis on inbreeding depression affecting fitness-related traits in both females and males, and on emerging evidence identifying male fertility as a diversity-sensitive bottleneck. The role of small, local, and indigenous breeds as reservoirs of adaptive genetic variation is highlighted. Sustainable breeding strategies, which include optimal contribution selection, region-aware mate allocation, genomics-informed mating constraints, germplasm exchange, and conservation programs are discussed as practical tools for balancing genetic gain and diversity.
- 1 Introduction
- 2 Measuring genetic diversity: effective population size
- 3 Identifying runs of homozygosity
- 4 The impact of genomic selection
- 5 Inbreeding and fitness
- 6 Managing homozygosity
- 7 Strategies to maintain genetic diversity: overview
- 8 Maintaining genetic diversity: mating programs and mate allocation
- 9 Maintaining genetic diversity: germplasm exchange and conservation of local and indigenous breeds
- 10 Integrating fertility and health into diversity management
- 11 Conclusion and future trends
- 12 Where to look for further information
- 13 References